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Nevertheless, the majority of the SNPs on the chip are also segregating in Chinese breeds (data not shown).
Interestingly, we observed a higher antibody response to PRRSV in the Landrace and Pietrain breeds (data not published).
Spanish Merino sheep were also more scattered over the plot than other domestic breeds (data not shown).
Over 90% of the consensus genotypes appeared in more than half of the individuals for all three breeds (data not shown).
To determine whether this duality was encompassing various geographical regions, we constructed reduced median networks based on the hypervariable region I (375 bp) for each breeds (data not shown).
To gain insight into similarities between the transcriptome of the two breeds, data from all the differentially expressed genes in the endometrium were used in a systematic cluster analysis.
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Breed, data origin, estimation method, data age and location of study were found to be significant (P<0.05) for majority of the traits analysed.
We next assessed the extent of LD for each US and European population and compared it to the complete breed data.
Recorded breed data were standardised according to a pre-existing scheme of canine breed terminology (VeNom codes [ 40]).
Models involving mixed-breed data do not take into account the fact that marker effects may differ among breeds.
Accuracies based on crossbred data were generally not much lower than accuracies based on pure breed data and almost identical when the breeds crossed were closely related breeds.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com