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Model fit was based on pseudo-Bayes factors and also on prediction accuracy of genomic breeding values computed on a validation data subset one generation removed from the simulated training dataset.
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However, the MME corresponding to: 25 where, and a2= M2 α will give predictions for breeding values computed as: 26 identical to those from equation (24).
This is a breeding value computed from the individuals sire, maternal grandsire, and maternal grand sire breeding values from 2003, before the bulls in the validation data sets had any daughter information (this "sire pathway" breeding value is often used for selection because dam information may be missing or biased).
Correlation between breeding values estimated based on genotype and based on a progeny test.
Estimation of breeding values based on DNA marker information is now used in many livestock breeding programs [ 2].
The accuracies of genomic estimated breeding values based on the genomic relationship matrices and breeding values estimated based on the average numerator relationship matrix were compared.
However, reliabilities of breeding values depend on the chosen allele coding system because different allele coding methods change the amount of uncertainty in the estimated breeding values.
One purpose is the estimation of breeding values based on marker genotype data.
We denoted the genomic estimated breeding values based on allele frequency method as GEBVa.
Genomic estimated breeding values based on genome-wide sets of molecular markers have become an essential resource in plant and animal breeding (Eggen 2012; Nakaya and Isobe 2012).
Selection was based on one of the three genomic breeding values, on pedigree BLUP breeding values, or performed at random.
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