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This approach is also commonly used in pedigree-based models where first, variance components are estimated from the data using restricted maximum likelihood and then, BLUPs of breeding values are derived with variance parameters replaced with those estimates.
Breeding values are derived from phenotyping individual trees in progeny trials in New Zealand and southeast Australia.
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The breeding values were derived from height growth and estimated by using the best linear prediction method (White and Hodge 1989).
Simulation shows that the resulting estimated breeding values are unbiased predictors of true breeding values.
Consider how breeding values are calculated for the different approaches.
Deregressed estimated breeding values were used as observations in a weighted analysis to derive direct genomic values for 3570 sires genotyped using the Illumina BovineSNP50 BeadChip.
Deregressed estimated breeding values were used as observations in weighted analyses that estimated marker effects to derive direct genomic breeding values for each breed.
Deregressed estimated breeding values were available for 328 genotyped boars.
Semantic diversity values were derived from previous literature22.
Values were derived from [ 17].
P-values are derived from 999 permutations of the data.
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