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Phenotypic selection and three GS breeding schemes were simulated.

Six alternative breeding schemes were simulated in which the design of the test population was varied: test sibs inherited maternal (Mat), paternal (Pat) or a mixture of maternal and paternal (MatPat) double haploid genomes or test sibs were obtained by maximum coancestry mating (MaxC), minimum coancestry mating (MinC), or random (RAND) mating.

Each breeding scheme was simulated at the nine penalties.

Different dairy cattle breeding schemes were compared using stochastic simulations, in which the accuracy of the genomic breeding values was dependent on the structure of the breeding scheme, through the availability of new genotyped animals with phenotypic information.

The schemes were simulated using the program, ADAM [ 10].

Studies that focus on the transfer of the acquired knowledge to poultry breeding considering the specificities of the broiler breeding scheme are currently under way.

Breeding schemes were compared by simulating truncation selection or optimum contribution selection with a restriction on pedigree- or genome-based inbreeding, and with selection using estimated breeding values based on genome- or pedigree-based BLUP.

In total, 72 different breeding schemes were investigated.

For each base population, six different breeding schemes were run.

Two breeding schemes were applied at the CNRRI.

Breeding schemes were initiated by sampling an unrelated base population of 20 sires and 600 dams.