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Accuracies of GEBV from ALL PE for the Limousin breed reflect that no pure-breed Limousin individuals were part of the training population.
The results obtained for the Brahman breed reflect the historical records on the formation of this breed, which indicate that a synthetic indicine population was created in the United States during the early 1900's by breeding indicine animals of the Nelore, Gir and Guzerat breeds imported mainly from Brazil to intensively upgrade the available taurine cattle from a base population [ 29, 30].
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One possible explanation for why Golden Retrievers separate from non-Golden Retrievers in this analysis is that hierarchical clustering by breed reflected unique properties of genetic variants within the breed, rather than a particular influence of breed on tumor phenotypes.
Our results could not clearly establish whether this separation resulted from geographical isolation alone or from the possible existence of other influences, since large-scale exchanges are known to have occurred between the Canary Islands and Africa in the past, and perhaps the NCA breed reflects this influence [ 14].
No sweep regions were shared between indicine and taurine breeds reflecting their divergent selection histories and the very different environmental habitats to which these sub-species have adapted.
In the region close to the drop ear associated SNPs there is very high heterozygosity in a heterogeneous sample of breeds, reflecting the presence of multiple SNPs with highly divergent frequencies between breeds.
The reported breed differences reflect, therefore, historical differences and take little account of changes in the susceptibility of breeds as a result of recent breeding programmes and, in particular, the NSP.
"All these breed differences reflect an experiment on artificial selection," says Careau.
The higher average of FST as well as the similar pair-wise FST within dairy and beef breeds might reflect the dominating influence of a substantial number of fixed SNPs in the pair-wise comparisons of breeds and groups.
The poor performance of the BOSTAURUS and ANGUS PE is in line with the poor performance of the BRAHMAN PE in the Angus breed, which reflects the need of having all predicted breeds in the training population.
The unique spotted coat patterns of Appaloosa of Native American Nez Perce origins -- and its wide range of body types within the breed -- reflects the scope of Skyhorse topics, imprints and breeds.
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