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All improved soybeans, except Williams 82 which was bred by backcross breeding in the USA, were bred using a pedigree breeding method in Korea (Supplementary Table S2).
Young adult male and female C57BL/6J mice obtained from Jackson Laboratories (Bar Harbor, ME) were bred using a monogamous breeding scheme.
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These traits include other biosynthesis genes affecting ripening or fruit quality, and constructs for herbicide, virus and insect resistance that were hitherto difficult or not possible to breed using a more traditional approach (Schuch et al., 1991).
At present, 104 cultivars have been bred using Koshihikari as a direct mating parent by many of the breeding divisions of prefectural and national research institutes (National Agriculture and Food Research Organization Website).
We inferred the relationship between the Niata samples and 134 cattle breeds using a principal component analysis (PCA) and phylogenetic trees.
In this study, we reported a genome-wide CNVs map in Chinese sheep breeds using a custom-designed Roche NimbleGen array comparative genome hybridization (aCGH) platform.
Training set cut off years were chosen for each breed, using a number of criteria.
In addition, the population structure was examined for four breeds using a principal component method [ 51] using GCTA [ 50].
The relationship between type traits and longevity was studied in the French Holstein breed using a survival analysis model.
Narrow sense heritabilities (h 2 ) of GRN were estimated separately for each breed using a repeatability model in ASReml3.0 [ 31].
Therefore, to find markers close to and in LD with QTL in all breeds, using a reference population that includes more than one breed can be advantageous.
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