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No evidence of recombination was detected for LCT, SLC2A2, and TAS1R2, whereas breakpoints were detected for the remaining genes.
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Genomic breakpoints were detected from mate-pair data using a custom pipeline and the locations of these breakpoints were used as input to readDepth.
No breakpoint was detected for any gene.
For SAMD9 and SAMD9L genes alignments no significant breakpoints were detected while using GARD, thus the complete alignments were used to establish each gene phylogeny.
"*": Obvious breakpoints were detected inside of genes.
Numerous recombination breakpoints were detected in this region, suggesting that this allele contains a recombination hotspot.
No significant breakpoints were detected in any of the eight wAnaINF genomes.
50/88 (56.8%) of the predicted breakpoints were detected in at least one of the genomes tested.
However, breakpoints are detected by LS-FL for these two chromosomes.
For each SV, two breakpoints are detected each corresponding to the genomic locus participating in the SV formation.
The inversion is detected when both breakpoints are detected.
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