Sentence examples for breakpoints for which from inspiring English sources

The number of true positives TP is the number of true breakpoints for which at least one breakpoint is detected closer than a given tolerance parameter.

For the identification of novel LCRs associated with the CCRs, ∼100 kb fragments of genomic sequence flanking breakpoints for which no LCRs are currently known, were analyzed for sequence homology (http:// www.genome.ucsc.edu; May 2004 freeze).

While reverse-transcriptase polymerase chain reaction (RT-PCR) is highly specific and capable of providing details about exonic structure, it only detects fusion breakpoints for which the assay is designed, and requires high-quality ribonucleic acid (RNA) that is often not available from formalin-fixed paraffin-embedded (FFPE) specimens.

We found that 5212%2%) translocation-participating gene pairs have breakpoints for which both genes co-localize with fragile sites (Table 1), and 177 (40%) gene sets contain one gene for which the translocation breakpoint is located at a fragile site (Additional file 2).

This analysis revealed the incorrect placement of sequence reads for the evolved populations, especially in regions containing breakpoints for SVs, which represent differences between the BW2952 reference and our starting strain (for a strain ancestry review, see supplementary fig. S1, Supplementary Material online).

Candidate rearrangements close to copy number segmentation breakpoints were considered if rearrangements for which both breakpoints correspond to copy number breakpoints were identified or if one copy number breakpoint could only match one rearrangement.

However, for some antimicrobials for which breakpoints have not been determined, breakpoints of S. aureus in M100 [ 21] were used with reference to a previous report [ 22].

SIR categories were assigned based on the breakpoints of the CLSI standard, except for fusidic acid, for which breakpoints of ≥24 mm (susceptible) and ≤18 mm (resistant) were used [ 28].

The results were interpreted in accordance with CLSI breakpoints, except for azithromycin, for which the European Committee on Antimicrobial Susceptibility Testing (EUCAST) breakpoints were applied [ 30].

The aCGH data confirmed the breakpoint position on the left arm of chromosome V for all 18 GCRs in which the breakpoint was previously identified by sequencing and identified the chromosome V breakpoint position for the 3 GCRs for which the breakpoint had not been previously sequenced.

Susceptibility testing of isolates is conducted onsite by using Food and Drug Administration FDAapprovedved testing methods and interpreted by using Clinical Laboratory Standards Institute breakpoint criteria for all agents except tigecycline, for which FDA breakpoints were used.