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Visual inspection of the mouse and human sequences of the transcription start to −1.2 kb revealed the first break in sequence identity after −228 and a CCAAT box just before −60 (Fig. 1C).
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At times he allows his discipline -- most impressive in the break-in sequence, which is like a speeded-up, deep-water version of Jules Dassin's "Rififi" -- to slip.
Based on the concept of break points in sequence T, we first propose a divide-and-conquer algorithm with O(n2m|S|+n3logk) time for solving this problem, where n and m are the length of T and the maximal length of sequences in S, respectively.
However, lack of a complete cox3 coding sequence, coupled with the fact that the site of oligoadenylation corresponds with the break in coding sequence of 5' and 3' cox3 portions, suggests that the short cox3 transcripts are important intermediates in the generation of the complete cox3 transcripts.
A break in the sequence is treated as a missing form or record.
For instance, in a 300 nt transcript that is targeted by a 70mer oligonucleotide, there is nearly a one in four chance that a random break in the sequence will occur within the target site for which the probe is designed.
One of these breaks resulted in sequence that allowed TEL-VIIL to be successfully assembled.
(5) No loop or break in miRNA sequences was allowed.
Recombination analysis revealed the presence of three break points in sequences which could alter the outcome of selection studies.
Break Ins.
In this specific case, local synteny helps break the tie in sequence based similarity.
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