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RBS is a multistage sampling procedure, which defines a unidirectional random walk along the natural branching pattern within the crown of a tree.
For example, the common ancestor of species X, Y and Z is believed to be 1 MY old, but the branching pattern within the clade is unknown.
However, the branching pattern within the TUC clade, including the chlorarachniophytes, was not resolved by ML analysis.
The various analyses and datasets give entirely different hypotheses of the major branching pattern within the subfamily.
However, the deeper nodes within the photosynthetic eukaryotic clade were not well supported and thus the branching pattern within the clade is unresolved.
The branching pattern within the monophyletic assemblage of the chlorophytes and early-diverging streptophytes is similar to other molecular and organismal phylogenies, suggesting the occurrence of a single HGT event.
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Finally, our phylogenetic analyses suggest that efforts to assign aurochs mitochondrial genomes within specific cattle sub-clades of the T clade may be irrelevant, since the branching pattern within this clade appears to contain several polytomies.
Therefore, for ortholog identification, we accepted trees with alternative branching patterns within the two major clades.
Branching patterns within the genetic clusters reflect neutral coalescent processes occurring within species (Kingman 1982), whereas branching among genetic clusters reflects the timing of speciation events (Yule 1924).
The branching patterns within the conifer genes within these clades are in accordance with patterns reported previously for these species [ 1].
Wägele et al. (2008) provided branching patterns within the Opisthobranchia, and Colgan et al. (2007) provided placement for additional families not included by Wägele et al. (2008).
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