Sentence examples for branches was generated using from inspiring English sources
The unrooted phylogenetic tree with unscaled distance branches was generated using the program MEGA 3.1 http://meme.sdsc.edu/meme4_1/intro.html with the Neighbor-Joining method.
The unrooted phylogenetic tree with unscaled distance branches were generated using the program MEGA3.1 http://meme.sdsc.edu/meme4_1/intro.html with the Neighbor-Joining method.
Pearson's correlation heatmaps (bamCorrelate bins, −-corMethod pearson) and heatmap representations of signal intensity (computeMatrix reference-point followed by heatmapper in the multiheatmapper branch) were generated using deepTools suite [ 28].
Branch support was generated using 1000 bootstrap replicates.
The diversity channel with L = 2 branches for simulation studies was generated using Eq. (5) and parameter values N = 12 and f d = 10 Hz.
A parsimony tree was generated using bootstrap analysis with 1,000 replicates and branch swapping in PAUP* 4.0 [ 57] and rooted with Arabidopsis and rice as out-groups.
The starting tree was generated using the Neighbor-Joining algorithm [ 20, 21], and the TBR branch-swapping operator [ 6] was used for exploring the solution space.
Phylogenetic tree was generated using the maximum likelihood method under WAG model in MEGA v5.2, and the reliability of interior branches was assessed with 1000 bootstrap resamplings.
