Sentence examples for branches of the reference from inspiring English sources

The total number of resolved internal branches of the reference (whole-mt genome) topology was not recovered in any of the individual gene phylogenetic analysis.

This allows to annotate the branches of the reference tree by the number of species induced by the query sequences that were placed into each branch.

Here, multiple origins of the same gene family on different branches of the reference tree are connected by lateral links; edges connecting the same two nodes for different gene families are joined to form weighted edges 82.

In case of OMA pairwise groups, the branch of the reference gene was not considered.

Thereafter, we apply PTP to each query sequence (one for each branch of the reference phylogeny) tree to delimit species.

Next, RAxML will insert (and subsequently remove again) the query sequence(s) one at a time into every possible branch of the reference tree, re-optimizing the three branch lengths at the insertion position for each attempt.

Thus, it can easily be integrated with the EPA to calculate the number of species in a set of query sequences that have been placed into a specific branch of the reference phylogeny.

Upon launching, RAxML initially optimizes the Maximum Likelihood model parameters and computes all branch-lengths of the reference tree, based on the alignment provided.

We measured topological accuracy in terms of the missing branch rate (also known as the false negative rate), which is the percentage of branches in the reference tree that are missing from the estimated tree.

The cox2 gene recovered the highest number of congruent internal branches with the reference topology, whereas the combined tRNA genes, cox1, and atp8 showed the lowest phylogenetic performance.

A specific sequence of injections of local anesthetic under fluoroscopic guidance into the joint space or targeting the medial branches of the dorsal rami, are reference standards for diagnosis.