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Two branches of the cluster, C1 and C2, were randomly selected (for example see Figure 2).
The column 'branch cut' reports the heights used for cutting branches of the cluster tree.
In the other two phylogenies (of G and I) the internal branches of the cluster clade were unresolved.
Modules were found by cutting branches of the cluster tree (dendrogram), using the dynamic tree cut library in R [ 38].
Hierarchical clustering defined branches of the cluster dendrogram in 13 color-coded modules (Fig. 3a) ranging in size from 35 to 339 genes (average size of 127 genes).
These processes and pathways were reflected in the major branches of the cluster dendrogram revealing differential expression in the phenotypically male and female samples.
Similar(53)
In fact, in this case some information needed for performing the splitting procedure are already in the nodes (each node knows how many children it has) and the different branches of the cluster-tree can be straightforwardly used for sending the CRT components.
Thirty-seven of 40 adenocarcinoma samples were grouped in one of the two major branches of the clustering dendrogram, of which 31 shared very similar expression profiles and were clustered within the same node.
The branches of the clustering tree (patients) were labeled by type of response according to the initial categorization of the early response (marked, intermediate, and poor) [11] (Fig 1).
The network modules were defined as branches of the clustering tree resulting from the dissimilarity matrix d ij = 1- ω ij.
These results indicate that rates of evolution of male genitalia may be heterogeneous among branches of the clusters' phylogenetic tree.
More suggestions(17)
division of the cluster
branches of the groups
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branches of the administration
branches of the workshop
branches of the party
branches of the burger
branches of the subject
branches of the school
branches of the government
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branches of the theatre
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branches of the service
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