Sentence examples for branch-site model from inspiring English sources

(b) Giraffe FOLR1 contains seven substitutions that each show evidence of positive selection (P<0.05) by the branch-site model.

The revised branch-site model A was used, which attempts to detect positive selection acting on a few sites on particular specified lineages, that is, 'foreground branches'61.

This approach corresponds to the branch-site model.

Therefore, the branch-site model [25], [26] was applied.

Each branch-site model was run multiple times to ensure convergence of log-likelihood values.

Both the two-ratio and branch-site model fail to detect any evidence for positive selection.

The branch-site model analysis shows that positive selection accelerates Tetherin evolution in ruminant lineage.

To address this issue, the branch-site model implemented in the codeML program in the PAML package was used.

The branch-site model makes rather stringent assumptions about the selective pressures acting on the foreground and background branches.

The branch-site model detected positive selection acting on the ancestral branch of the New World Monkey lineage, suggesting an episodic adaptive evolution.

We use the branch-site model [23], [49] to detect such temporal changes in positive selection pressure, as implemented in the codeml program in the paml package [25].