Sentence examples for branch were generated using from inspiring English sources
Pearson's correlation heatmaps (bamCorrelate bins, −-corMethod pearson) and heatmap representations of signal intensity (computeMatrix reference-point followed by heatmapper in the multiheatmapper branch) were generated using deepTools suite [ 28].
The unrooted phylogenetic tree with unscaled distance branches were generated using the program MEGA3.1 http://meme.sdsc.edu/meme4_1/intro.html with the Neighbor-Joining method.
The unrooted phylogenetic tree with unscaled distance branches was generated using the program MEGA 3.1 http://meme.sdsc.edu/meme4_1/intro.html with the Neighbor-Joining method.
Multiple sequence alignment and dendrogram with branch length were generated using CLUSTAL W Multiple Sequence Alignment Program with default settings (http://www.genome.jp/tools-bin/clustalw).
Majority-ruled parsimonious trees were generated using the program protpars of PHYLIP [ 35] with maximum likelihood branch lengths calculated using TREE-PUZZLE [ 36].
The phylogenetic relationships of fourteen B. cenocepacia strains/isolates, including our six isolates of interest, were generated using the Neighbor-Joining method60 with 100 bootstrap replicates undertaken to display branch supports61.
