Sentence examples for branch site from inspiring English sources

Another possibility is that this motif positions the branch site for interaction with the U2 snRNP.

The likely U2-candidate shown in Figure 2B contains a "UAGUU" motif which complements the 5' of intron branch site "AACUG (or AACUA)", but does not have upstream bases that can bind to 3' of the branch-site adenosine (coloured red), thus instead of leaving the branch-site adenosine bulged this interaction leaves an open-end at the branch site.

BS, branch site; PPT, polypyrimidine tract; SS, splice site.

Regions with best match to branch site PWM is underlined.

The U2AF factor then recruits U2 to the branch site.

The branch site sequence is shown in Figure  4C (middle).

This approach corresponds to the branch-site model.

Therefore, the branch-site model [25], [26] was applied.

We used the likelihood-ratio test 2 (i.e., the branch-site test of positive selection) constructed from this branch-site model [47].

However this alteration of branch-site recognition may not induce any functional difference because the branch-site adenosine is still free to attack the 5'-guanosine phosphate.

Each branch-site model was run multiple times to ensure convergence of log-likelihood values.