In the present paper a branch of the FDEM software, developed at the University of Toronto and called Y-Brick, is presented and validated as a useful tool to model the reversed cyclic behaviour of masonry structures of varying levels of complexity.
Inductive software engineering is the branch of software engineering focusing on the delivery of data-mining based software applications.
Before analysis, the matrix was cleaned by pruning rogue taxa, identified as unstable terminals causing artificial lowering of branch support, using the software RogueNaRok [ 104].
For each male, landmarks were manually positioned on the pictures of the ventral branches using the software tpsDIG2 version 2.1 (Rohlf 2006) and compiled in a.tps file as a set of five x, y coordinates (forming one configuration).
The ratios of the rates of nonsynonymous to synonymous substitutions (Ka/Ks) of orthologous gene pairs were estimated for each branch of the phylogenetic tree using PAML software [ 40].
For the estimation of selection mode for the NBS-encoding genes among B. oleracea, B. rapa and A. thaliana, the ratio of the rates of nonsynonymous to synonymous substitutions (Ka/Ks) of all orthologous gene pairs were calculated for each branch of the phylogenetic tree using PAML software [ 40].
The images were analyzed for total tube length and number of branching points using the software program ImageJ.
Also, the possibility to evaluate branch- and branch-site models of positive selection, as seen in several of the software evaluated, will greatly increase the range of biological hypotheses addressed by POTION.
These have been merged into the main development branch, and were made available in the 1.90 release of the software.
