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We have attempted to alleviate some long branch effects by using a conservative inclusion set of unambiguously alignable sequence and by including multiple representatives of each lineage where possible, but we cannot confidently rule out long branch attraction.
We discern three classes of long branch effects.
Probably due to long branch effects, Ecdysozoa and Lophotrochoza appear not to be monophyletic in our analysis.
Based on long branch effects and inhomogeneous substitution rates, this grouping was critically discussed since its first molecular reconstruction [ 23].
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Weighbor uses a weighted NJ tree construction procedure that has been shown to effectively correct for long-branch effects [ 69].
However, these theories are not capable of including branching effects on an a priori basis.
Diffusion coefficient of iso-propanol is an order of magnitude lower than that of n-propanol due to branching effects.
Both methods are useful to discover long-branch effects.
and Sirindhornia H.A. Pedersen & Suksathan – also appear sensitive to long-branch effects.
This conflict might result from differences in methodological assumptions and/or long-branch effects.
The detection and avoidance of long-branch effects in phylogenetic inference has been a longstanding challenge.
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