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Whole brain masks for each subject were extracted from T1-weighted data using BrainVISA/Morphologist (Mangin et al., 1998).
We constructed ROI brain masks for each tuning type that included all the voxels that contributed to the 3 demarcated zones of bins in the 3D histogram, regardless of where in the brain they occurred.
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A tractography mask was computed from a whole brain mask of each subject using a previously described procedure (Guevara et al., 2011).
Dipole density VBDDi was averaged over each one of eight regions based on anatomically defined brain masks, generated for temporal, frontal, central and parieto-occipital parts of the brain within each hemisphere following the classification of the anatomical atlas provided with MRICRO's AAL [ 45].
Segmented brains were co-registered to the mean functional image and split into masks for each ROI (see Figure 1B for an example set of MTL ROIs).
To exclude all nonbrain and non cerebrospinal fluid (CSF) tissue, a brain mask was created for every participant using all baseline images in a k-means clustering algorithm with eight clusters (7).
The person who designs the masks for each layer is called the layout engineer, or mask designer.
These segmentations generated a set of masks for each participant for each hemisphere.
Then, the disk masks with a radius of 10 pixels selected the set of the neighborhood region masks for each pixel location.
b Application of brain mask onto parametric maps for two different transaxial planes with MRI overlay.
Diffusion tensors were fitted using the least squares method (Basser et al., 1994) for each voxel of the brain mask by FSL's 'dtifit' program.
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