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Global variations in signal were factored out by first calculating the mean whole brain intensity for each time point then regressing the time series against the whole brain means (3dmaskave then 3dDeconvolve in AFNI).
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The average intensity for each brain region was recorded.
The minimum intensity for each peptide feature was set to 500.
In the microscope, this yielded similar fluorescence intensity for each species at the same concentration.
The fluorescence intensity for each array (sample) was normalized to the median florescence of the array.
For expression data, the signal intensity for each target is provided along with annotation.
Overall intensity for each frame,, and intensity of each subband,, are defined as (1).
The mean intensity for each array was scaled to 100.
The intensity for each peak was normalized to the sum of the peak intensities for each data set.
8 10 integrated image intensities were obtained for each testis, and the mean image intensity for each group was calculated.
Z scores were calculated for each replicate based on the log2 (635/532 intensity) for each probe.
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