Sentence examples for bp was aligned with from inspiring English sources
For subtyping and further analysis, the nucleotide sequence spanning the p24 and p7 region of gag gene, nt 1577 2040, HXB2 [31] (comprising 460 470 bp), was aligned with sequences from the Los Alamos HIV sequence database.
To verify the specificity of RNAi for SeTre-1 and SeTre-2 genes, the dsSeTre-1 fragment (460 bp) was aligned with the dsSeTre-2 fragment (475 bp), and 19-bp consecutive identical sequences between the two fragments were not found (Figure 5A).
HQ336219) of 1,479 bp was aligned with 26 other DENV-3 strains, including the most similar sequences identified in nucleotide BLAST search and a global set of sequences representing different genotypes (4), by using MUSCLE (www.ebi.ac.uk/Tools/muscle/index.html).html
When combined, these sequences (1153 bp to 1180 bp) were aligned with a consensus length of 1180 bp, and contained 16 nucleotide substitutions and 3 indels.
The 8,583 contigs with sequences longer than 30 bp were aligned with reference sequences installed on the Gbrowse system [ 30] (online access available [ 31]).
Nucleotide sequence from a 302-bp region of the RABV nucleoprotein (bp 1175 to 1476) was aligned with Pasteur RABV, GenBank accession no.
The 788-bp sequence was aligned with sequences of other Borrelia species representing the LB and relapsing fever clades, and phylogenetic analysis was conducted.
To verify that the result was specific to RNAi of the SeCHSA gene, dsSeCHSA (635 bp, Figure 2A) was aligned with SeCHSB; 19 bp consecutive identical sequences were not found (Figure 2B).
The sequence of the 32-bp dif region was aligned with the consensus sequence of Gamma-proteobacterial dif sites [ 41].
RNA-seq reads of 100 bp were aligned to the genome assembly with the Burrows-Wheeler Alignment tool (BWA) [ 20] in paired-end mode.
During the detection process, some parts of the inversions were found to be aligned without mismatches, as follows: The inversion of 8 bp included a palindrome in part and was aligned with the palindrome.
