They illustrate the hypothesis by identifying multiple 20-25 bp sequences identical to sequences in adenovirus genome and also claim but do not show similar findings for herpesvirus genomes.
The BSMV construct carrying a 184-bp fragment of an artificially assembled sequence (asHMW) with one 85-bp sequence identical to most x-type glutenin subunit genes (asX) and one 99-bp sequence identical to y-type glutenin subunit genes (asY), named as BSMV HMW, was generated and used to silence the entire HMW-GS gene family in wheat grains.
The resulting 223-bp PCR product (GenBank accession no. JQ756394) consisted of a 141-bp sequence identical to the Y. pestis pla gene, linked to a 72-bp sequence that was 97% similar to enterobacterial rep protein genes.
The 184-bp fragment contained one 85-bp sequence highly homologous to most of the x-type glutenin subunit genes (asX) and one 99-bp sequence identical to most of the y-type glutenin subunit genes (asY).
A fluorescently-labeled primer, with a sequence identical to the 19 bp tail, was added to the amplification reaction as the sole source of fluorescent label.
These two amplicons were fused with the RT-cassette in a 3-way Overlap-PCR with ODNs 12015/12018 generating an RT-cassette product with 50 and 200 bp terminal sequences identical to regions in pCC1Fos (Additional file 1: Figure S2ii).
Many of the CSBs consisted of 8 or more bp, and often contained core sequences identical to binding sites for known factors as well as other core sequences that aligned with shorter novel cDTs, suggesting that the longer cDTs may contain core recognition sequences for two or more TFs.
As reported by Fitz-Gibbon et al. [ 12], this 31 bp sequence was found identical to the clustered regularly interspaced short palindromic repeat (CRISPR) spacer sequence encoded in some of the type II P. acnes strains.
The length of obtained sequences (738 bp) was identical to the dog-derived A. caninum ITS sequence, as well as the sequence similarity range was 98.6%100%%.
In the DNAs of some prokaryotes (e.g., E. coli), there are ~50 bp long sequence motifs identical to fragments of bacteriophagal genomes.
