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There are two cyclic AMP response elements (CRE) with the consensus sequence CGTCA within 250 bp of the start of transcription.
A 6 bp run of Ts within 50 bp of the start is expanded to include all Ts with any number of single base gaps.
pTMVΔcp was then generated from pTMV-KXEN by partially deleting the CP gene from downstream +55 bp of the start codon of CP.
The locations of the TATA box (−100 bp from start codon) and several petal specific regulatory motifs (within 500 bp of the start codon) in the CHS promoter are highly conserved [20].
A 106 bp deletion at −51 bp and a C to T transversion at −65 bp of the start codon of ftsH (MRA_3649/Rv3610c) might affect the expression of this gene in H37Ra.
A FRT-containing P-element upstream of the Dcas gene was provided by a P-element located within 50 bp of the start of the Dcas open reading frame (ORF).
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T-DNA insertions are located 752 bp, 1173 bp and 898 bp downstream of the start codon in lrx3, lrx4, and lrx5, respectively.
Several clusters exhibited bias for the region of the 5' UTR closest to the start codon (0 50 bp or 0 100 bp upstream of the start codon).
Promoter deletion revealed a pRb-responsive region between −108 bp to −55 bp upstream of the start of the site of transcription.
In contrast, only the region from -1 bp to -749 bp upstream of the start codon of CYP720B4 is unique, followed by repetitive sequence.
Unless stated otherwise, we define CIS regions to our module genes as being 200 bp downstream and 1,000 bp upstream of the start of exon 1.
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