Sentence examples for bp from each transcript from inspiring English sources

The DGE tags, which consist of the CATG restriction enzyme digested site and an additional 17 bp from each transcript, were aligned onto the transcriptome unigenes of ACB.

The DGE tags, which consist of the CATG restriction enzyme digested site and an additional 17 bp from each transcript, were de novo assembled using SOAPdenovo program just permitting 1 bp mismatch [ 16].

For the Illumina data sets we randomly sampled 7.5 million, 100 bp single-end reads from each transcript pool.

Initially we have prepared 3'-end cDNA libraries from multiple mussel tissues, named Ese00, Tst00, Tst01, MxT01, MxT02, MxT03, with a uniform size (300 600 bp) tagging each transcript with a unique probe [ 45, 46].

The major advantage of HT-SuperSAGE over other similar techniques is that 26-bp tag sequences can be isolated from each transcript, which is so far the longest tag sequence obtained from a defined position of transcripts.

It covalently links the corresponding 5' and 3' signatures of full-length transcripts into PET sequences of around 36 bp (18 bp from each of the 5' and 3' signatures of the same mRNA transcript) and concatenates multiple PETs to form longer stretches of cDNA fragments for high throughput sequencing [ 20, 21].

For the 454 data sets we randomly sampled 250,000 sequences from each transcript pool, taking fragments of up to 400 bp.

Working from the written transcripts, we used an open-coding process to distill prominent themes from each transcript.

We settled on the criterion that each documented mRNA transcript with an occurrence of two HRE consensus matches within 200 bp from each other and at most 10 kb upstream of its TSS is a putative target of the GR.

Library construction of digital gene expression sequencing (DGE; BGI-Shenzhen, China) generates tags with 21 base pairs (bp) from the 3' ends of each transcript, and such tags are utilized to represent the expression levels of transcripts [ 12].

A gene was called promoter bound by EFL-1 if a peak overlapped at least 200 bp with the region 500 bp upstream from the transcript start site to 500 bp downstream from the transcript start site as obtained from Wormbase.