Sentence examples for bp from each run from inspiring English sources

This system can generate 4-6 × 108 bp from each run, with individual read lengths of 400-500 bp [ 24], and is suitable for de novo sequencing of small genomes [ 25], whole genome resequencing [ 26], SNP detection [ 27], and in particular, sequencing of transcriptomes [ 28].

The Firecrest, Bustard and Gerald analysis module (Illumina) were used for image analysis, base calling and filtering the raw data (36 bp reads) from each run to generate the sequence reads.

Due to the non-deterministic nature of de novo assembly described above, the results from each run of the pipeline may vary slightly, normally within 10 bp.

Next, each dataset was analyzed at three pattern-lengths – 6, 8, and 10 bp – and at each length the analysis was repeated twice with the five highest scoring motifs retained from each run.

454-pyrosequencing produced 1,499,670 reads, with an average read length of 379 bp, for a total of 569,060,777 bp from a single run.

We therefore sampled trees from each run independently and compared the results of independent runs.

We combined results from each run using LogCombiner v1.6.1 [ 51].

In BAYESCAN, monomorphic loci were removed from each run.

To make LightCycler-determined values from different runs comparable to each other and to conventional values, we reran subsets of samples from each run in a common run.

We found 398,286 sequence reads with an average read length of 274 bp from two independent runs.

As the Illumina read length was set to 75 bp, we chose initial k-mer values ranging from 29 to 45 bp for each sample run.