Sentence examples for bp downstream of each from inspiring English sources

The flanking sequences (500 bp upstream and 500 bp downstream) of each RPSA pseudogene were blasted against the bovine and human genome.

Data were processed as described previously [ 8] to identify potential pathogenic mutations located within 50 bp upstream and 10 bp downstream of each exon.

We performed the analysis on a region 2 kb upstream to 100 bp downstream of each of the EC-restricted genes using vertebrate_non_redundant matrices (yes set).

For further data processing of results, binding sites detected around annotated genes can be downloaded as a file containing all sites detected for the selected TF between 2000 bp upstream and 2000 bp downstream of each gene.

When analyzing methylation pattern of genes, segments located at 1 kb upstream and 200 bp downstream of each RefSeq transcript were determined and used to calculate the average methylation level and entropy.

The correlation of T-UCR/host gene expression could only be carried out for intragenic T-UCRs that had host gene exons within their surrounding tiled regions (2500 bp upstream and 500 bp downstream of each UCR).

PhyloP scores for each nucleotide in the motif, including 15-bps upstream and 15-bps downstream of each occurrence in the genome, were averaged for all occurrences of each motif.

The open-access JASPAR database of matrix-based transcription factor binding profiles (Bryne et al. 2008) was used to search 3,000 bp upstream and 500 bp downstream of the TSS of each gene.

Regions spanning 500 bp upstream and 100 bp downstream of the first nucleotide of each exon were analysed.

The H3K27me3 peaks overlapping gene promoters were identified using a 2.5‐kb window (2 kb upstream and 500 bp downstream of the first nucleotide of each RefSeq gene).

For the analysis we selected regions between 2000 bp upstream to 100 bp downstream of the transcription start site of each gene (Yes set) that were conserved between human, mouse, and rat.