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Trick et al.[ 5] estimated the overall sequence polymorphism rate between the transcriptomes of the two cultivars 'Tapidor' and 'Ningyou 7' to be one SNP per 2,130 bp based on a minimum read depth of eight, or 1,195 bp based on a minimum read depth of four.
Here we present a high-resolution reconstruction of lake dynamics, watershed processes and paleohydrology for the last 34 000 cal yrs BP based on a sedimentological and geochemical multiproxy study of 8 cores from the Raraku Lake sediments constrained by 22 AMS radiocarbon dates.
The scaffold N50 size is 66,920 bp, based on a 22 Gbp total genome size (Table 3).
We found an average of 1,931 bp/μm with a standard error of the mean (SEM) of 61 bp (based on a total of 13 measurements).
We estimated the stretch of hemimethylated DNA following the replication fork to be 60.000 bp (based on a replication speed of 1000 bp/sec and an average hemimethylation time of 1 min).
BINs are genetic groupings assigned by BOLD for sequences >500 bp based on a 2% initial sequence divergence that is combined with an algorithm permitting deviations from this threshold in cases of genetic distance continuity or discontinuity [ 43].
Similar(52)
On average, each band counted for approximately 3,525 bp, based on an overall average insert size for the three libraries of 141 kb [50].
On average, each band counted for approximately 3359 bp, based on an overall average insert size for the three libraries of 141 kb (Table 1).
Majority-rule consensus sequences were reconstructed for an autonomous element (2,571 bp) encoding a 602-amino acid transposase and for a major family of non-autonomous elements (192 bp) based on an alignment of 25 representative copies of each type (Additional file 1).
A single SNP located at 13861 bp (based on NCBI accession number DQ457195) showed a significant association with disease incidence with a Bonferroni corrected p value of 0.027 and an odds ratio (OR) of 1.885 (Table 1).
For each chromosome, ARLEQUIN generated the joint null distribution of global F ST [ 74, 75] and heterozygosity between populations (H BP) based on 50,000 coalescent simulations under a hierarchical island model (HIM) or under a finite island model (FIM).
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