Sentence examples for box vicinity from inspiring English sources

In addition, the modifications detected in DNA flexibility and curvature properties in the TATA box vicinity are likely to facilitate the binding of TBP and TFIIB GTFs at this particular region [40] (Figure 3B) thereby promoting PIC formation.

Long microsatellite (CA)n repeats may facilitate the formation of DNA racket structures in the promoter region that bring the TATA boxes into vicinity of the transcription factor-binding site (Schweiger et al, 1995).

Poe also set part of "The Balloon-Hoax" and "The Oblong Box" in this vicinity.

The results shown in Table 1 demonstrate that nearly all the histone genes contain CREB half sites along with a TATA box in the vicinity of these.

The presence of a high-affinity cre box in close vicinity to the TSS shown in this study, suggests that repression by inhibition of RNAP binding is one of the most effective mechanism of negative regulation by CcpA.

Consistently with this, aside from the two Sp1-binding GC-boxes mentioned above, we found two NF-Y-binding CCAAT-boxes in the vicinity of the SREBP-binding site of the DHCR24 core promoter.

To investigate the regulation of the promoters of the three genes, we analyzed computationally, the presence of CpG islands and TATA boxes in the vicinity of the promoters of the three genes.

To test this hypothesis, we first studied the appearances of telo-boxes in the vicinity of mtRPGs and cpRPGs (between upstream 40kb and downstream 40kb of the translation start codon).

The sites were validated by checking the neighbouring gene organization (e.g. identified origins in Prochlorococcus genomes were flanked by DNA polymerase beta subunit III gene on the 3' side and the Threonine synthatase gene on the 5' side) and the presence of DnaA boxes in their vicinity [ 45].

The oriC predicted from the extrema of the cumulative GC-skew were validated by checking the neighbouring gene organization along with the presence of DnaA boxes in their vicinity [ 46, 50], and also by comparing the same with the oriC sites of the respective genomes, as annotated in the DoriC database [ 51].

Intriguingly, in the envelope-containing Sireviruses additional boxes cluster at the 5' vicinity of the envelope.