Next, for every exon in the gold standard set, we determined the overlap between its boundaries and the corresponding boundary of an overlapping TAR, if any.
At the unit cell boundary, the corresponding periodic boundary conditions were applied.
Indeed, since we considered only introns bounded on both sides by internal exons, and required that the boundaries of the exon containing the unspliced intron coincided exactly with the boundaries of the corresponding exon-intron-exon chain in the RefSeq mRNA isoform (see Methods), all retained introns considered here are followed by spliced out introns.
In some sets, one of the reported elements extends beyond the 100% identity boundaries; c) description inconsistency, at least one member of the set is annotated as a pseudogene within the boundaries of the corresponding IC; d) absence in Ensembl annotation, at least one of the members of the set is not reported in Ensembl.
The relationship between the natural frequencies of the non-uniform beams with finite periodicity and the band gap boundaries of the corresponding infinite periodic beam is also investigated.
In scenario 1, we applied the measured rate values plus/minus their corresponding standard deviations as upper/lower boundaries for the corresponding rates.
One example is the [ 41, 42] O'Brien-Fleming boundaries (and the corresponding adjusted thresholds of the confidence intervals and the P-values), which show the adjusted thresholds for significance if a sample size has not been reached [ 41, 45].
