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This function reflects a Poisson process with constant density and takes into account that a bound site carries an exclusion zone that prevents unphysical binding configurations.
The related SREBP cleavage activating protein (SCAP) (Fig. 3C and Fig. 4L) and the membrane bound Site 1 and 2 peptidases (S1p and S2p) are not transcriptionally induced.
We employed limited micrococcal nuclease (MNase) digestion and tiled oligo qPCR to identify a well-positioned nucleosome near the MP and BRM/SYD bound site at the FIL locus.
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High-throughput sequencing identifies bound sites.
The software identifies distinctly bound sites based on affinity data.
The primary GGAAnnGAAA motif was found in 62.38% of Spi-B bound sites.
In addition, TFAP2A binding motifs are enriched at BRG1 bound sites.
Among the commonly bound C/EBPβ peaks, 423 C/EBPβ bound sites are in unmethylated promoter regions.
Binding site positions were based on [19].
Binding site positions and scores for matrix similarity and core similarity are indicated in Table 4.
Binding sites prediction of unbound protein with bound templates of same Homology Indexing (Part 2).
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