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However, positive selection seems to play significant roles in the retention of both types of duplicates.
To test the hypothesis, we compared the amino acid identity between both types of duplicates.
To compare the evolutionary forces for both types of duplicates, we first performed the traditional dN/ dS analysis.
Based on the same assumption with Shiu et al. [ 33], this result implies that positive selection plays essential roles in the retention of both types of duplicates.
Additionally, both types of duplicates are enriched in genes that are important in the response to external, biotic and abiotic stimulus and stress.
We chose both types of duplicates because: 1) tandem duplicates and retrogenes are easier to screen, and 2) after ancient large-scale genome duplications at the origin of vertebrates, most duplicates have been created via small-scale events in mammalian genomes [ 8].
Similar(54)
All measurements in both types of ELISA were performed as duplicates in each plates.
Our R&D team came up with a solution that identifies these types of duplicates by using a document similarity algorithm," Digg's Director of Product Chris Howard writes in a blog post.
Two types of duplicates were identified and flagged: records with identical coordinates –true duplicates and those records that fall in the same grid cell of the environmental spatial layers – geographical duplicates.
Thus, expression evolution is different between these two different types of duplicates.
Three different types of duplicates in A. thaliana were included: α-WG duplicates, tandem duplicates, and "other duplicates" that arose from the other types of gene duplication events.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com