Sentence examples for both tumor and reference from inspiring English sources

We used 100 ng of both tumor and reference DNA for each analysis.

A signal-to-noise filter of ≥ 5 for both tumor and reference channels was applied to the data.

It is also possible to utilize class information of the samples, for instance, by including both tumor and reference samples [ 21].

The final yield of labeled genomic DNA for hybridization on the array was 7 10 μg of both tumor and reference DNA.

Two clear clusters were formed, but 12 samples (including both tumor and reference samples) could not be placed in either cluster.

In all experiments, WGA protocol was used for both test (tumor) and reference (Promega DNA) samples.

Putative somatic variants were identified by subsequently genotyping all variant positions in the raw datasets of both the tumor and reference sample using samtools mpileup, to ensure the absence of variant alleles in the reference sample; only positions showing less than 5%% variant alleles in the reference sample were considered somatic.

For the "mutations" called by mRNA-seq but not exome-seq in the coding region, we found about 7% were not covered or below the coverage threshold for somatic mutation call in exome-seq; 10% were called as "germline" mutations; 66% without variants in both tumor and normal (or with reference allele); and 4% as "somatic" but not reaching the significant cut-off of p value < 0.05.

We used 5 min as the starting point for linear regression model that was optimized against the normalized tumor and reference tissue time-activity curves (TAC), with the slope being the distribution volume ratio (DVR).

The images and time-activity-curves (TACs, depicting activity concentration over time) of the PET study are shown in Figure 3, and the tumor-to-background ratios (resulting from a comparison between activity concentration in the tumor and reference tissue) are summarized in Table 1.

After normalization we performed median adjustment to the counts obtained from tumor and reference samples so that the median log2 values for tumor and reference were similar.