The number of fixed, shared, and polymorphic mutations in one chromosomal background that are monomorphic in the other chromosomal background were also obtained using DnaSP.
In conclusion, at least 23 distinct clades of peptidases belonging to several structurally unrelated superfamilies have been recruited as toxins, and are often shared between polymorphic toxins and host-directed effectors from diverse plant and animal pathogens.
Interestingly, both strains share the polymorphic 503L of ROP16I/III and GRA15II compared with type I, II, and III although a complete homology of ROP16 and GRA15 was noted between the Wh3 and Wh6 strains (Fig. 4).
The numbers of total segregating sites, fixed and shared polymorphic sites within and between individual lineages are summarized in Table 2. ITS sequences representing the 63 ITS genotypes identified above were used as queries to identify similar sequences in GenBank through BLAST searches.
This resulted in a set of 64,613 shared loci that contain both monomorphic and polymorphic RAD tags.
Pm3l, Pm3p, Pm3q and FJ212314 shared polymorphic blocks among each other, either completely or partially [ 6].
Shared ancestral polymorphisms are polymorphic sites that originated in the ancestral species and have survived genetic drift in both the human and the chimpanzee populations.
This is particularly important for shared or polymorphic insertions whose inferred presence or absence could be useful for phylogenetic analysis.
All the above metal-dependent nuclease domains are shared by polymorphic toxin systems with R-M systems, but are apparently absent among classical toxin-antitoxin systems [ 22, 28].
Possible explanations for this paraphyly of H. pileatus Y chromosome were misleading inference due to our small sample size or incomplete lineage sorting in the short time since these two species had shared a polymorphic common ancestral population [ 6].
