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Both sequence identity and structural tendency of the LM context was analysed.
Genome ambiguity was assessed using both sequence identity and read mapping.
Both sequence identity and 3D structure prediction show that CAG has a highly conserved DBD domain (fig. 1).
The weak correlation between interaction numbers and sequence identity and the relatively strong function prediction power of considering both sequence identity and interaction numbers suggest that they are two rather independent factors informing the function similarity of two genes.
Because HERV elements (HERV-Hs in particular, likely due to their prevalence) provide both sequence identity and enrichment in hotspot motifs, we believe that they contribute substantially to genome instability and human disease.
The lack of a unique best match, in terms of both sequence identity and length of alignment, was recorded as absence of that particular family member in the Salinas genome.
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Probe alignment was performed both by sequence identity and assignment to the Ensembl Gene database.
> To identify orthologous genes, we used the information of both DNA sequence identity and synteny (gene order) as follows.
In addition, Nair & Rost (2002b) noted that both the sequence identity and the secondary structure of proteins can serve as useful predictors of compartmentalization.
To test this hypothesis, we fit a generalized linear model to the microsporidian synteny data, modeling the proportion of syntenic pairs between species as a function of both protein sequence identity and the mean proportion of intergenic DNA in the two genomes being compared (see Materials and Methods).
Using the available EST sequences for these two species, we performed a reciprocal blast to obtain best hit orthologs and compared both the sequence identities and presence of Insertion/ Deletion (INDEL) according to BLASTN outputs.
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