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Then we characterized the binding of HR1s and HR2s via both sequence alignment and structural analysis.
Using STAP, individual query sequences are analyzed by a three-step process, with each step employing both sequence alignment and phylogenetic analysis.
In the proposed integrated method, both sequence alignment and SVM-LZ complexity pairwise have been used to predict peptide sequence.
Both sequence alignment and structure modeling suggest that the newly identified protein CpMRP is very likely an ABC transporter.
However, for phylogenetic reconstructions, highly divergent sequences cause problems with both sequence alignment and tree inference [ 73] and we found that inclusion of the most divergent kinesin sequences hindered tree reconstruction (data not shown).
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We have developed a Markov chain Monte Carlo (MCMC) approach which samples both sequence alignments and locations of slowly evolving regions.
Their two associated histories A and B were used as starting points to obtain both sequence alignments and reconciliations costs (according to Equation 1).
Both the sequence alignment and a ruler that facilitates positioning can be turned on or off by two check boxes: " Show/Hide Sequence Alignment" and " Show/Hide Ruler".
As an example, Table 2 shows the results of both the sequence alignment and a comparative hybridization analyzed with TAS and our JAVA tool for the gene clusters containing wbp and related genes that are involved in the synthesis of lipopolysaccharides (LPS).
Both the multiple sequence alignment and phylogenetic tree pages can be found in the "tools" page.
Furthermore, the identification of such regions can aid both structure determination and sequence alignment, and may also aid in drug design.
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both quality alignment and
both prosthesis alignment and
both cell alignment and
both sequence comparison and
both sequence mutation and
both nanofiber alignment and
both sequence batch and
both range alignment and
both sequence identity and
both sequence similarity and
both sequence content and
both sequence length and
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