Sentence examples for both replicons the highest from inspiring English sources

For both replicons, the highest orthology is between Ctai and Ceut, and the ranking of the species according to orthology in this cluster remains the same for both replicons, with Cmet displaying the least orthology.

To infer the phylogenetic origin of dispensable genome and its potential differences with respect to the phylogenetic relationships of the core genome, a homology analysis on taxonomic partitions of the nr database (Pini et al. 2011) was carried out to define the bacterial (and proteobacterial) phylogenetic groups to which each replicon shows the highest similarity (fig. 4).

When megablast was used to search for similarities of the pHAMBI1141b plasmid to sequences in the NCBI nr database, the replicon generating the highest similarity (in terms of summed up alignment lengths) was pRtrCIAT899b of R. tropici CIAT 899 (a total of 25 kb matching sequence).

Origins of replication (Oris) were identified near the peak of the plots for both replicons on the basis of homology.

BLASTn searches of each replicon of OV14 revealed the highest synteny to S. fredii for the chromosomes and to A. vitis S4 pTiS4 and A. tumefaciens pTiC58 for the E. adhaerens pOV14 (Additional file 2).

It can be concluded that both replicons that constitute the R. solanacearum genome are very similar in respect to distribution and composition of SSRs and presence of compositional biases, although minor differences between both replicons are present.

Among the three replicons, ORFs on cp26 have the highest average K S values (p= 10- 6 in a t-test of within-species K S values between cp26 and lp54; Table  4).

The dincucleotide GC is overrepresented in both replicons; this is also the case in most other β- Proteobacteria and γ- Proteobacteria [ 39].

The twenty replicons with highest Sophistication scores included 1 Spirochaete, 1 member of the Fibrobacteres, 1 member of the Euryarchaeota and diverse members of the Proteobacteria.

This corresponds wel with the size distribution between both replicons (63.96% of all bases are in the chromosome, 36.04% are in the megaplasmid).

To assess the variability of dinucleotide relative abundances within a replicon, both replicons were divided into 12 and 7 (for the chromosome and the megaplasmid, respectively) non-overlapping fragments and ρ*XY values were calculated for each fragment.