Sentence examples for both repetitive element analysis from inspiring English sources

Initial genome architecture was examined by using both repetitive element analysis and genome synteny.

Repetitive element analysis was performed by using the RepeatModeler and RepeatMasker programs (http://www.repeatmasker.org).org

Repetitive element analysis was conducted as described above using RepEnrich software.

Repetitive element analysis revealed numerous LINE-L1 elements at regions where conservation is lost among the Sry copies.

To test the repetitive element analysis we simulated ChIP-seq data on human chromosomes 5, 10, and 19 (see Additional file 1: Figure S2 for HMM parameters).

Previously, the repetitive element content of the M. oryzae genome was described (Dean et al. 2005; Xue et al. 2012); however, repetitive element analysis had not been performed on M. poae or G. graminis var.

For repetitive element analysis, we made a custom dataset using all SINEs/LINEs/EhEREs coordinates recently deposited to AmoebaDB (personal communication, Omar Harb), then aligned all sequences with Bowtie using the parameters -v 2, -k 5.

To examine how repetitive element methylation was related to gene-associated methylation, we restricted our analysis to placentas for which we had both repetitive element and gene-associated (array) methylation data for the 26,486 CpG autosomal loci (n = 184).

It proved to be a robust method for imaging of both repetitive elements and coding genes.

These results suggest that lower global DNA methylation, assessed by LINE-1 repetitive elements methylation analysis, would be associated with a greater risk for MetS in the presence of obesity.

Only spots with annotated DNA sequence with 90% or more of their length overlapping a repetitive element were used for analysis.