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Because the results of the SMR computation were similar for both reference populations the subgroup analysis given below only refers to the German population.
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The second most common cause of death category among both reference populations and among the LC cohort was neoplasms (189 deaths; 26.1% of total).
Although gBLUP does not predict the breeding values for these unrelated individuals as accurately as Bayes B, it still relies on QTL information to better predict the relationships between animals, since it is able to predict a proportion of breeding value in both reference populations 2 and 3 under the IM, whereas under the polygenic model this accuracy was zero.
The primers used are listed in Table 4. Another apricot SSR, AMPA112, previously described by Hagen et al. [ 49], was polymorphic in both reference populations and was also included in the map comparison.
Candidates with sires included in both reference populations had somewhat higher DGV correlations than those without a genotyped sire in the reference population; however this difference in DGV correlations almost disappeared when the number of reference bulls reached 4,896.
Compared with an established reference population, the study population showed a significantly worse EQ5D-5L index both throughout the treatment period and 8 weeks after frame removal.
In the normal reference population, the 90th percentile of RΔTH is 7%.
The levels of individual assignment accuracy were extremely high in the traditional breeds for both the reference populations and the test samples.
The purpose of this work was to study the impact of both the size of genomic reference populations and the inclusion of a residual polygenic effect on dairy cattle genetic evaluations enhanced with genomic information.
However, the benefit of combining reference populations depends on the size of the reference population, since there is a diminishing return relationship between size and accuracy of reference populations.
Increasing the size of the reference population decreases the probability to miss a haplotype in the reference population.
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