Sentence examples for both query and database from inspiring English sources

The order of fragments is assumed to be congruent in both query and database sequences.

Significant BLAST matches were scored for each CDS using cutoffs of 10-5 for the P value, and 70% for the length of the alignment compared to both query and database proteins.

We first selected the high-scoring sequence pairs (HSP) in which sequences from both query and database are at least 500 bp long with at least 95% identity and in unmasked portions of the genome.

The goal of database similarity searching methods is to seek for regions showing statistically meaningful similarity, but these methods are too sensitive: slight changes in parameters and/or in both query and database sequences may give rise to considerable changes in the resulting hits.

We conducted similarity searches with tblastx (translating both query and reference database) and blastn (both query and reference database remain nucleotides) with an E-value threshold of 0.001.

The manager is also responsible for processing the FASTA input files (both query and target database are in FASTA format, eliminating the need for pre-formatting database files) and distributing these processed files.

sRNA_Annotate searches the output of this IGR vs. IGR BLAST to identify sequence alignments that overlap the RNA-encoding genes in both the query and database IGR sequences.

Sequences were compared using a reciprocal-BLAST-like setting where each sequence is used both as query and database entry.

Simrank considered all regions of both the query and database sequences in each pair-wise calculation of similarity.

Multiple users can launch Artemis and ACT clients and both query and modify the database simultaneously.

A gene module consists of a subset of genes and a subset of experiments, and SAMURAI exhaustively extracts gene modules that share common gene expression patterns in both query and gene expression databases (17).