Sentence examples for both quality alignment and from inspiring English sources

Based on the conservation of the tetrahedral coordination of the zinc ion and helical binding domain, predicting both quality alignment and backbone submodels is relatively straightforward (Prasad et al., 2003 ).

Resulting R data structures allow manipulation of sequence, quality, alignment and other information.

However, high quality alignments and variant calling depend on a quality reference sequence.

However, starting from the output of HTS alignments, filters for base quality, alignment quality and coverage must be applied prior to variant calling.

We found that SATé performed well in generating high-quality alignments and in accurately estimating the phylogeny of earth tongue fungi.

Using SAMtools, we postprocessed the alignments to filter out low-quality alignments and to detect single-nucleotide polymorphisms (SNPs) (Li et al. 2009).

Here we focus on results for representative methods, a simple method and a highly sensitive and accurate method producing poor and high-quality alignments and models, respectively.

This strategy allowed us to make a high quality alignment for the first ∼1075 aa, and the last ∼500 aa.

Secondly the quality of the input alignment is extremely important and a poor quality alignment will lead to poor performance.

Using the simple nearest alignment space termination algorithm, the resulting aligner operates in linear time, requires a small memory footprint, and generates a high quality alignment.

Hence we did not remove areas of uncertain alignment, especially since the AU plots of both the Solenopsis and Apis BAli-Phy alignments suggest that there are still high quality alignment blocks within these "problematic" areas to warrant their inclusion in the overall alignment procedure (Figure 1b).