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Expression data from both platforms was compared using z-transformation.
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Both the simulation and the experiments were done for several cases and results of the same operating conditions from both platforms were compared for model validation as well as system performances.
Genes were linked between the ATH1 GeneChip and the cDNA arrays using locus tags (www.Affymetrix.com), and only genes present on both platforms were compared.
If the ratio of a gene was ≥ 1 or ≤ 1 for both platforms being compared, the expression was considered matched irrespective of the magnitude.
First, to ensure calculations were based on maximum numbers of miRNAs, correlations were determined for all miRNAs that were 'present' on both platforms being compared.
When the DE genes in both platforms were compared with a more restrictive criterion including logFC values (PINARRAY3, logFC > 0.5; adjP.value < 0.05. RNA-Seq, logFC > 1, FDR < 0.05), 49 were found to be overexpressed in Tamrabta and 39 were found to be overexpressed in Leiria (Fig. 1b).
Also, the sensitivity to detect CNA by the 2 platforms was compared.
In this study, genome-wide LOH and copy number analyses of 10 cervical cancer cell lines were investigated using SNP and CGH arrays and the sensitivity to detect CNA by the 2 platforms was compared.
Both sugars and syngas platforms are compared considering multiple products (energy services, valuable chemicals, fuels).
WES and ACE platforms were compared after normalizing to both 12 Gb of total sequence data and to 100× mean coverage depth in each platform's respective target regions.
An 18-year comparative study of 153 cementless first-generation rotating platforms were compared with 259 third-generation rotating platforms with increased surface congruity and a rotational stop-pin to prevent "spin-out".
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