Sentence examples for both phylogeny and sequence from inspiring English sources

More than twenty orthology prediction algorithms and databases have been developed, which can be divided into three main groups: graph-based (orthology is inferred from sequence similarity), tree-based (orthology is inferred from phylogeny), and hybrid-based (orthology is inferred from both phylogeny and sequence similarity) [8].

This novel classification is well supported by both the phylogeny and sequence divergence of > 4%.

Results from phylogeny and sequence analysis revealed early adaptation of the C-terminal divergent domains in Urochordata, before the expansion of STIMs in Vertebrata.

In this study, we identified KCNA genes from partial genome sequences of the sea lamprey and the elephant shark, and investigated their phylogeny and sequence properties.

We present an algorithm— maxAlike -that aimaxAlike -thatucting sequences in aimsrticulat tareconstructingbasequencesspecins phylogeny and sequence homologs from other sparticular

Exon 9 is similar to exons 4 and 17 in that there is relatively good resolution of the phylogeny, and sequences from vertebrates are present.

Chicken genes were named with the systematic nomenclature used in humans and mice based on phylogeny, synteny, and sequence homology.

Based on the phylogeny and the sequence data, we dated the divergence time between the wild and domestic camels.

In both phylogenies, sequence alignments were performed using ClustalW, implemented in MEGA (Molecular Evolutionary Genetic Analysis v.6; Tamura et al. 2013) Concatenation of the individual alignments was performed using the Perl script FASCONCAT (Kuck and Meusemann 2010).

This provides the ability to co-estimate the phylogeny and the multiple sequence alignment.

To our knowledge the evolutionary histories of only a few families have been investigated in the Hox paralogon using both sequence phylogenies and synteny comparisons, for example the DLX family [ 58, 59], the nuclear receptor family [ 68] and the voltage-gated sodium channels [ 75, 76].