Sentence examples similar to both permutation types suggesting from inspiring English sources

For both permutation types, 1000 permuted samples are created, and the perturbation scores for each permuted sample is calculated.

Efron and Tibshirani (2007) suggested to employ both permutation types to test the significance of gene sets.

158, 159 Importantly, it has been shown that repeat number can vary in different tissue types from the same individual carrying permutation alleles, suggesting that numbers obtained from blood mononuclear cells (the cell type used for FXS diagnostic purposes) may not always directly translate to the brain.

For permutation type, we chose gene_set according to the GSEA suggestion.

Parameters were set to default except for min = 5 and permutation type set to "gene set".

The GSEA parameters used were as follows: metric = signal to noise; permutation number = 1,000; gene size minimum = 15; gene size maximum = 500; enrichment statistic = classic; permutation type = phenotype.

The permutation number was set as 1000, and the permutation type was set as "gene-sets".

GSEA setting applied in this study: dataset was collapsed to gene symbols and 1000 permutations were run (Permutation type: Gene Set).

GSEA was performed using gene set permutation type as default and the number of permutation was set to 1000.

The GSEA parameters used included: metric for ranking genes, signal2noise; enrichment statistic, weighted; permutation type, phenotype; permutation number, 1000; and gene set size restrictions, 4 minimum, 500 maximum.

The number of permutations was set to 1,000, and the permutation type was set to "gene set," because fewer than seven samples existed per phenotype [ 28].