Sentence examples for both pathways and samples from inspiring English sources

Both pathways and samples were clustered.

Pathways and samples were clustered with different metrics: in particular, Euclidean distance, Pearson's correlation and Manhattan distance were used.

Specifically, we used standard hierarchical clustering and clustering with support trees [34]: in the latter case pathways and samples were bootstrapped over 100 and 1000 iterations.

This is illustrated with an example including 3 hypothetical pathways and 4 samples, which belong to two clinical classes, A and B. For a given sample, si, a Li,k value is calculated with respect to each pathway, MPk.

Our approach and GSEA [9] differ with regard to the following aspects: pathway scoring, differential pathway detection, and sample-specific information representation for classification.

We then performed hierarchical clustering of the samples based on each sample's probability of activation of Src, Ras and PI3K pathways, and observed that samples were classified into seven clusters with distinct pathway activation patterns.

In the present work, we designed our own gene array containing genes involved in various signaling transduction pathways and analyzed placental samples from patients with preeclampsia and controls.

Several unfolding and refolding transition pathways are sampled and analyzed.

Functional analysis of these TUSs highlights several active pathways and processes in the sampled tissues.

The findings demonstrate that DECO overall improves the prediction of key pathways for both the gene- and sample-randomizing GSA methods.

Web-interactive heatmaps are used to explore gene and pathway alterations across samples and tumor types.