Sentence examples for both pairwise alignment and from inspiring English sources

Sequences were aligned using ClustalW [ 37]; settings for both pairwise alignment and multiple alignment: gap insertion penalty 10, gap extension penalty 0.1.

They were positioned on the E. coli 16S rRNA gene by using a pairwise alignment and converted to conservative fragments.

The rate-limiting step in PyNAST is the pairwise alignment, and the algorithm is therefore of complexity corresponding to the pairwise alignment algorithm.

Pairwise alignments and multiple alignments of DNA sequences were performed with the default parameters.

The sequence similarity score is defined in analogy to pairwise alignments and additionally has the positive semi-definite property.

The VISTA database contains mouse-human pairwise alignments and mouse-rat-human multiple alignments.

Thus, a 100%% of similarity was identified with both, the pairwise alignment algorithm of Smith-Waterman implemented on the EMBOSS Website [48] and the CLICK software [49].

The rapidly evolving ITS rDNA region spanning across ITS1 rDNA and ITS2 rDNA sequences differed by 34% (375 pairwise alignment length) and 37% (314 pairwise alignment length), respectively.

Analysis of the relationship between the different members is based on pairwise alignment, compilation, and comparison of their SET-domains.

A pairwise alignment method and its extension tackling multiple alignments is considered in [ 48].

As shown in Additional file 3: Figure S3, our " pre-built" pipeline integrates both phylogenetic method and pairwise alignment method, which are composed of 5 and 2 steps, respectively.