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Only very few tools integrate both microarray and RNA-Seq data and provide a user-friendly interface to many different statistical and data-mining as well as visualization methods.
The finding is confirmed by the results obtained from both microarray and RNA-Seq analyses.
132 GAGE is another method for pathway analysis that is applicable to both microarray and RNA-seq data.
Gene expression patterns were determined by both microarray and RNA-seq, thereby providing a global dual platform cross validating dataset.
Data from both microarray and RNA-Seq were then ComBat normalized [ 27] in log2 space using a parametric prior, with the batches corresponding to brain of origin.
Among genes showing significant down-regulation in response to DHA in Plasmodium rings and trophozoites, it is notable that cytosolic ribosome function is represented among significant GO terms from both microarray and RNA-seq data (Tables 1, 2 and 4).
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We used both microarrays and RNA-seq to determine the transcriptional profile of wildtype and upc2 deletion cells grown in hypoxic conditions.
Further, for both microarrays and RNA-Seq, we used random primers for the first-strand cDNA synthesis, thus ensuring approximately uniform coverage along the transcripts (Methods).
To better understand the possible involvement of mesangial cells in the Cd2ap mutant mouse model of FSGS we performed gene expression profiling using both microarrays and RNA-seq.
Both microarrays and RNA-seq were used to characterize the gene expression profiles of the podocytes, mesangial cells and endothelial cells, providing a global dual platform cross-validating dataset.
However, reanalysis of multiple gene expression datasets using both microarrays and RNA-seq shows that median expression levels of X-linked genes when assayed in whole testes are in fact approximately 1.5-fold lower than those of autosomal genes (Meiklejohn et al. 2011).
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