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Our methodology can detect both interspersed and tandem repeats.
A number of programs have previously been written to detect repeats within genomes, including both interspersed repeats [ 33] and microsatellite repeats [ 34- 36].
Both interspersed repeats [ 11- 16] and other duplicated elements [ 17] may induce homologous recombinations and insertions/deletions in the host genome, which may introduce great difficulties to the correct assembly of the repetitive regions in the host genome.
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The significant tissue-specific DNA methylation differences in both long interspersed nucleotide element-1 (LINE-1) and CCGG content have been observed.
A likely reason for this might be the presence of both long interspersed nuclear element (LINE) and LTR elements within this region (Supplementary Table 3).
In contrast, 5hmC density appeared to be relatively depleted in transcription start sites (TSS), CpG shores, and, most strikingly, CpG islands and both long and short interspersed elements (LINEs and SINEs, respectively).
Patients who did not have both spoligotyping and mycobacterial interspersed repetitive unit-variable-number repeat (MIRU-VNTR) analysis performed on their isolate or did not live in King County at the time of specimen collection were excluded from the analysis.
Six types of coding region repeats were first reported for ESTs and full length transcripts [ 17, 19] and are present in the second exon in both tandem and mixed interspersed organization [ 15].
Ty3-gypsy retrotransposons were the most abundant interspersed repeats in both regions.
Mobile genetic elements (class I) and non-coding short interspersed repeats (class IV) both constituted 13 14% of all species-specific repeats.
Lectures emphasize conceptual and visual examples of materials phenomena and engineering, interspersed with guest speakers from both inside and outside academia to show possible career paths.
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CEO of Professional Science Editing for Scientists @ prosciediting.com