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However, since they were not in perfect LD and diagnostics between them did not suggest multicolinearity (variance inflation factor < 2.8) we chose to include both in subsequent analyses because it is possible that the SNP is capturing variation beyond the effect of the CNV.
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If one target overlapped two ORFs, both ORFs were included in subsequent analyses.
The point estimate of the per-generation change in mean fitness in the re-assay was slightly negative but not significantly different from the original assay, so data from both assays are included in subsequent analyses unless noted otherwise.
Accordingly, we used only open urban areas and artificial urban areas in subsequent analyses (both variables were statisticaly not correlated).
Finally, duplicate gene probes were averaged leaving a core group of 7,170 genes common to both platforms, identified and used in subsequent analyses.
From this final dataset of 1494 proteins and 4904 transcripts, two proteins and two transcripts contained a negative data point in their time series profiles, and were removed from both mother and daughter datasets in subsequent analyses.
4 The patient group also displayed greater levels of depression, t(1,24) = 6.96, p < .01, d = 2.84, and anxiety, t(1,24) = 3.14, p < .01, d = 1.28, and thus both were entered as covariates in subsequent analyses.
We therefore employed both age and gender as covariates in subsequent analyses.
We therefore recommend including probes annotated with these SNPs in subsequent analyses for both Infinium I and II probes (total 14,538).
Both haplotypes were used for each strain in subsequent analyses.
Residuals from these models were then used in subsequent analyses.
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