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Norovirus GII is predominantly responsible for acute diarrhea worldwide, as described in most studies [ 10, 24], and our findings (10.41% GI, 85.16% GII, 4.43% mix of both genotypes) were consistent with them.
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Over all in both populations across the years, over 50% genotypes were consistent in their trend of susceptibility either consistently low or consistently high.
By performing NGS and analyzing the data, we confirmed that the resultant STR genotypes were consistent with those of CE-based typing.
In 2009, Thornhill and colleagues [42] showed that while the 2005 bleaching event caused compositional changes in Montastrea annularis and M. faveolata symbiont populations, they noted that the recovered genotypes were consistent with the population prior to the thermal stress.
All genotypes were consistent with Hardy-Weinberg equilibrium (data not shown).
The beef and dairy samples had been genotyped separately so the combined data set was rescored by ParAllele to ensure that genotypes were consistent.
In total 5056 single-nucleotide polymorphisms (SNPs) were identified for which the genotypes were consistent with one of the QTL genotypes.
Differences between genotypes were consistent in direction across replicates, although the estimate of the distance between genotypes varied to some extent.
In two cases this was because the MLE was superior to the best classification, but the other 32 genotypes were consistent with more than one class.
These experiments were repeated several times and although the absolute IC90 values varied with different batches of culture medium, the relative differences in IC90 between the bone marrow of the various genotypes were consistent throughout these experiments.
Studies analysing gene expression in parallel with quantitative trait loci (QTL) have shown that drought-induced changes in gene expression in specific genotypes were consistent with the observed physiological responses [ 11, 19].
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