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We are confident that these exons are not an artifact due to the preliminary nature of the X. tropicalis genome assembly, because they are present in both genomic and transcript sequence.
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Papaya genome peptide, genomic and transcript sequences were downloaded from The Hawaii Papaya Genome Project v1 [ 76].
We investigated several chordate genomes for twintron presence at the genomic and transcript levels.
The poplar peptide, genomic and transcript sequences were downloaded from Joint Genome Initiative (JGI) v1.1 [ 75].
Grape peptide, genomic and transcript sequences were downloaded from Grape Genome Browser v1 [ 77].
Genomic and transcript sequences from the Ae. aegypti genome [ 25] were retrieved from http://aaegypti.vectorbase.org/index.php and http://www.ensembl.org/index.html.html
The Agilent "105K" microarray chip was designed for maize genomic and transcript sequences in an effort to cover most maize genes with at least one 60-mer oligonucleotide probe.
Arabidopsis lyrata peptide, genomic and transcript sequences (v1) were download from the JGI [ 80].
Sorghum genomic and transcript sequences were downloaded from the JGI [ 78, 79].
Our data provide extensive information on the 24 genes at the genomic and transcript levels.
Human, mouse, cow, opossum, platypus, and chicken genomic and transcript data were downloaded from Ensembl (V.52) (Hubbard et al. 2009).
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